rs216027845 SNP Detail

Summary

• ID
  rs216027845
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79952380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTTTTT TTTTTTTCAT
  TCTTATTTTC ATTTTTTTTC TCCCTGAGCA CCTAGAAGAA AAGGGGAAAA TCAAAAGTGA
  AGAATTGGCG CCCAGGAAGC GGACGTGGAC CCGGTTGTGG GGACCGGGAG AGTTGTGGAG
  GTCGTTCCTG TTTTTCCCCG TTCCTTTTTT CCCCTTCTTG GAACATTTGG AAGAAGCGGG
  T
  GGGGGGGGGG GAATTCGAAC TTGAAAAGAA TTGGCGCTCC CGAAGGGGAC GAGGACAAAG
  AGTGGGCCAG GATGGACGTG GCGGACCCCG AGCCGTTGGG CCTTTTCTCC GAGGGCGAGC
  TGATGTCGGT GGGCATGGAC ACCTTCATCC ACCGCATCGA CTCCACCGAG GTAATCTACC
  AGCCGCGCCG CAAACGCGCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BR/cdJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381014774	MGP_WTSI_10_79579291	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BR/cdJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216027845					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381014774	MGP_WTSI_10_79579291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79952380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1843	CpG island 1843	within coordinates
Gm67739	predicted gene, 67739	1266 bp upstream
Rr384985	regulatory region 384985	140 bp downstream
Stk11	serine/threonine kinase 11	within coordinates
Tssr94480	transcription start site region 94480	722 bp downstream
Tssr94481	transcription start site region 94481	660 bp downstream
Tssr94482	transcription start site region 94482	280 bp downstream
Tssr94483	transcription start site region 94483	268 bp downstream
Tssr94484	transcription start site region 94484	157 bp downstream
Tssr94485	transcription start site region 94485	749 bp upstream
Tssr98400	transcription start site region 98400	569 bp downstream
Tssr98401	transcription start site region 98401	1440 bp downstream