rs216027932 SNP Detail

Summary

• ID
  rs216027932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48651671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCCAGCC TGGTCTACAA AGTGTTCCAG GACAGCCAGG
  GCTATACAGA GAAACCCTGT CTCAAAAAAC CAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  R
  AACAAGGGAG GAAACACCTA ATTTGCATAT GCAGACTTGA CTGAAGTCAG GCAAATGTTA
  AGCCAGTTCT CTGGCAGGGA ATCAGAAGCT TAACTGATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321794332	CHEV_6_48624736	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216027932					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48651671 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	1413 bp upstream
Gm46958	predicted gene, 46958	1095 bp downstream
Rr629719	regulatory region 629719	within coordinates
Rr629720	regulatory region 629720	911 bp proximal
Tssr56160	transcription start site region 56160	62 bp upstream
Tssr56161	transcription start site region 56161	464 bp upstream
Tssr56162	transcription start site region 56162	1377 bp upstream
Tssr56163	transcription start site region 56163	1423 bp upstream
Tssr56164	transcription start site region 56164	1456 bp upstream
Tssr56165	transcription start site region 56165	1671 bp upstream