rs216034014 SNP Detail

Summary

• ID
  rs216034014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53748328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGGCGG CGGGCCGGGG
  CCGCGCGGCG CGCCGGGGCC TCGGGAGGCG GCGCGGGGCG GCGACGCGAT GGCGCGGGCC
  GGTGCGGGGC TCGCCCGTGC GCCGCGGTGG AGCGGGCTCC GGGCGCGTGA GGGCGGGCGG
  TGGCGAGGCC GGCGGCTGCG GGCGGAGTGC GGCCGGCGCG CGGGGCCGTA GGCACCGTGC
  Y
  CGGCGCGCGC CCCCCTCGGC GGGCCTGGCG GGGATCCCGG CGCAGCTTTG TTCCCCGTGC
  GTGGCCCGCG TCGCCTGTCC TCCCAGCCGC TGCCCTGGGC GCCGGAGCGC TTTGTCTGTG
  TGCGCTGCCC CCCGCGATTC TGCCCCCAGC CCTTTGTTTC GCCGCCTTAG GCTCTCTGTG
  GGAGCCGCTG CGCGCCCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963862	MGP_WTSI_5_53982225	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216034014					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963862	MGP_WTSI_5_53982225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53748328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	1900 bp downstream
Rr611645	regulatory region 611645	1616 bp distal
Rr611646	regulatory region 611646	505 bp distal
Rr611647	regulatory region 611647	within coordinates
Rr611648	regulatory region 611648	6 bp proximal
Rr611649	regulatory region 611649	504 bp proximal
Rr611650	regulatory region 611650	922 bp proximal
Tssr46226	transcription start site region 46226	1542 bp downstream
Tssr46227	transcription start site region 46227	635 bp downstream
Tssr46228	transcription start site region 46228	609 bp downstream
Tssr46229	transcription start site region 46229	553 bp downstream
Tssr46230	transcription start site region 46230	457 bp downstream
Tssr46231	transcription start site region 46231	318 bp downstream
Tssr46232	transcription start site region 46232	283 bp downstream
Tssr46233	transcription start site region 46233	264 bp downstream
Tssr46234	transcription start site region 46234	73 bp upstream
Tssr46235	transcription start site region 46235	247 bp upstream
Tssr46236	transcription start site region 46236	262 bp upstream
Tssr46237	transcription start site region 46237	414 bp upstream
Tssr46238	transcription start site region 46238	480 bp upstream
Tssr46239	transcription start site region 46239	543 bp upstream
Tssr46240	transcription start site region 46240	610 bp upstream
Tssr46241	transcription start site region 46241	931 bp upstream
Tssr51023	transcription start site region 51023	1721 bp upstream
Tssr51024	transcription start site region 51024	794 bp upstream
Tssr51025	transcription start site region 51025	397 bp upstream