rs216043426 SNP Detail

Summary

• ID
  rs216043426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45949283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATCCGAG ACCTTTTGTC GTTCTCTTCT
  ATCCTGTACA GCTCCTTTTG TTTAAGAGTC TAGATCCATC AGTCTCTGTA GAGGACTATG
  TCTCACTTGT TCCCTCATGA ACATTAAGCA CCTAGCGTAG TAGCATAGGG TTAAGAACTC
  R
  GGATGTTTTG GGTAAATAAT GTAAATGTAT CTATCTCTTC TGATTTGTAC CAGTGTAAAC
  AAAACCAATA AGACTTTTTT TAAGGATACA TTTTGATTGC AAATATATCA TATTTTTGAA
  AAGGAATTTA ATCAGTGGTA ATCCAACACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323657880	CHEV_11_45871958	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216043426					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45949283 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2772	CpG island 2772	1829 bp distal
Cpgi2773	CpG island 2773	1155 bp distal
Gm72342	predicted gene, 72342	131 bp upstream
Rr445870	regulatory region 445870	803 bp distal
Rr445871	regulatory region 445871	284 bp distal
Rr445872	regulatory region 445872	41 bp distal
Rr445873	regulatory region 445873	1663 bp proximal
Tssr107582	transcription start site region 107582	324 bp upstream
Tssr107583	transcription start site region 107583	261 bp upstream