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rs216048296 SNP Detail
Summary
  • ID
    rs216048296
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:102489866 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCATGGGGA AGAGGGAGCC
    GCGCGCGGGG TGGTGCTGCC CTATCCCAGA TGGGGACAGA GAACTGTGAC CCTGGACCCC
    TGAAACCCTA GCAGAGCGCT GGAGGTGGTG GGAAAGGGGT CTGGTTTCTT TGGTAGACTA
    GCTGTCTTTT GAGGACCGGG AGGATTTAAC GGAAAGGGGT GAAAAAGTGT GAAAAGAAAC
    M
    GTGGAGGTTA CTTCAGAGAT TTAAAGACAA TAAAGAATTG TCCACGGAGC CTGCAGGAAA
    CACTGCCTGG GCTGCAAGGA GGGGACCAGT TGGAATGAAT GAGCCAGGAT CAGAGCCGGG
    GCGGGGCGAA GAGAAGCGCA CAGCCTTGAA TGCTAGCTTT GGGCGCGCAC GGGTGTGTGT
    GTGTGTGTGT GTGTGTGTGT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss355075034 MGP_WTSI_2_102499678 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216048296 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss355075034 MGP_WTSI_2_102499678 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:102489866 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11978 CpG island 11978 within coordinates
Gm57687 predicted gene, 57687 179 bp upstream
Rr561713 regulatory region 561713 852 bp distal
Rr561714 regulatory region 561714 709 bp distal
Rr561715 regulatory region 561715 230 bp distal
Rr561716 regulatory region 561716 within coordinates
Slc1a2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 Intron
Noncoding-Transcript-Variant
Tssr19098 transcription start site region 19098 1282 bp downstream
Tssr19099 transcription start site region 19099 1210 bp downstream
Tssr19100 transcription start site region 19100 941 bp downstream
Tssr19101 transcription start site region 19101 852 bp downstream
Tssr19102 transcription start site region 19102 826 bp downstream
Tssr19103 transcription start site region 19103 779 bp downstream
Tssr19104 transcription start site region 19104 757 bp downstream
Tssr19105 transcription start site region 19105 687 bp downstream
Tssr19106 transcription start site region 19106 669 bp downstream
Tssr19107 transcription start site region 19107 649 bp downstream
Tssr19108 transcription start site region 19108 613 bp downstream
Tssr19109 transcription start site region 19109 571 bp downstream
Tssr19110 transcription start site region 19110 289 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory