rs216048980 SNP Detail

Summary

• ID
  rs216048980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97273066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTTTAC TTCCTTCTTT
  TCCTTTTAAC AAATCTGTAT AGCTGAGTTA AAAGCTCAGG TTTTGAAACT ATATATATAT
  ATAAAAATAA TTGTTTTGGT TTTTTTTTTT TTCCCCGAGA CAGGGTTTCT CTGTATAGCC
  CTGGCTATCC TGGAGCTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCGCCCG
  Y
  CTCTGCCTCC CGAGTGCTGG GATTAAAGGC GTGTGCCACC ACGCCCGGCA ATATAATTTT
  TTTTTAACCC AAAGAAAGGA AACCTAAGCC CCAATCTTAT CTAATTCATC AGAAGACTTC
  TTGCTATCTA TAGCAGGCCA GCCAGTTCTG GCTTTTGCCA GCTGAGCAGT CTTGGGCTAT
  TTTGCATAGC TTCTGTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395111092	MGP_WTSI_15_97205616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T	C	C	T	C	T	C	T	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216048980					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T	C	C	T	C	T	C	T	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395111092	MGP_WTSI_15_97205616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97273066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	1655 bp proximal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	within coordinates
Rr404594	regulatory region 404594	1766 bp downstream
Tssr132858	transcription start site region 132858	1801 bp downstream
Tssr132859	transcription start site region 132859	1783 bp downstream
Tssr132860	transcription start site region 132860	1763 bp downstream
Tssr132861	transcription start site region 132861	1237 bp downstream
Tssr132862	transcription start site region 132862	1197 bp downstream
Tssr132863	transcription start site region 132863	1149 bp downstream
Tssr132864	transcription start site region 132864	1126 bp downstream
Tssr132865	transcription start site region 132865	979 bp downstream
Tssr132866	transcription start site region 132866	1503 bp upstream
Tssr132867	transcription start site region 132867	1973 bp upstream
Tssr132868	transcription start site region 132868	1995 bp upstream
Tssr136113	transcription start site region 136113	1290 bp upstream