rs216050763 SNP Detail

Summary

• ID
  rs216050763
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCAGTT CAAGGGCATT
  CAATCAATGC CTTCCTGTGA CCACCAGAGC CACTAGGCAC ACACATGGTA CACATTTATG
  TATGCAGATA CACTCATACA CATTAAATAA AAGTAAATGT GGCTGGAAAA TTCGCTAGGA
  GGTTAGGAGC ACTTGTTATT CTTGCAAAGG ATCCTGTTTC AATTCCCAGC ACCCACAAGG
  M
  GCCTCACCAC TTCGTTAAGC TCCAGGCATG CATATGGTGC ACAGACATGG ATGTAGGTAA
  AGCATTTATT CACACAAAAT GAAAAAAAAA AAAAAGAACT AAAAATGGAT AAATAGAAAT
  AAGTGGGTTC CTTTAAAAAA TAACTTGGGG GGGGCTGGTG AGATGGCTCA GTGGGTAAGA
  GCACCCGACT GCTCTTCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277625	CHEV_4_116301211	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216050763					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485803 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	1092 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	665 bp upstream
Rr84401	regulatory region 84401	198 bp proximal
Rr84402	regulatory region 84402	1198 bp proximal
Rr84403	regulatory region 84403	1598 bp proximal
Rr99808	regulatory region 99808	2 bp distal
Rr398403	regulatory region 398403	1606 bp downstream
Rr398404	regulatory region 398404	911 bp downstream
Rr398405	regulatory region 398405	442 bp downstream
Tssr42894	transcription start site region 42894	1209 bp upstream
Tssr42895	transcription start site region 42895	1103 bp upstream
Tssr42896	transcription start site region 42896	698 bp upstream
Tssr42897	transcription start site region 42897	650 bp upstream
Tssr42898	transcription start site region 42898	618 bp upstream