rs216052894 SNP Detail

Summary

• ID
  rs216052894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44397616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTGAGT TCCAGGACAG
  CCAGGGCTAC ACAAAGAAAC TCTGTCTCAA AAAGCCAAAT GCAGCCTGGT CTACATAGTG
  AGTTCTTTTC TTTTTTTCCT CTTCTCGCTT TTCTTCTGCC TGCCTGCCTG CCTGCCTGTC
  TGTCTGTCTG TCTGATATCA ATGGCTTTGC AGCCTACTCT ACATAGTTCC TTTCTTTCTT
  Y
  TGAAAAAAAA ATTTAAGATA CGGTTTCTCT ATGTAGCTCT CACTATGTTG GAATTTGCTT
  TGTAGTCCAG GCTGGGCTTC AAACTCAGAG GTGTGCCTGT CTCTGCCTCT CAAGTGCTGG
  CATAAAGGTT TGTGCCACTA AGCCCAATTT ACAAAGCAAA TTGTAGATCA TTCAGGGTTA
  CATAGACCTG TTTGACAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552389	MGP_WTSI_19_44483667	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216052894					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552389	MGP_WTSI_19_44483667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44397616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	1526 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	1348 bp distal
Rr363360	regulatory region 363360	215 bp distal
Scd1	stearoyl-Coenzyme A desaturase 1	1468 bp upstream
Tssr5525	transcription start site region 5525	1702 bp upstream
Tssr5526	transcription start site region 5526	1669 bp upstream
Tssr5527	transcription start site region 5527	1659 bp upstream
Tssr5528	transcription start site region 5528	1629 bp upstream
Tssr5529	transcription start site region 5529	1578 bp upstream
Tssr156614	transcription start site region 156614	1139 bp downstream
Tssr159517	transcription start site region 159517	1679 bp upstream
Tssr159518	transcription start site region 159518	1608 bp upstream
Tssr159519	transcription start site region 159519	1554 bp upstream
Tssr159520	transcription start site region 159520	1509 bp upstream
Tssr159521	transcription start site region 159521	1465 bp upstream
Tssr159522	transcription start site region 159522	1355 bp upstream
Tssr159523	transcription start site region 159523	1300 bp upstream
Tssr159524	transcription start site region 159524	1276 bp upstream
Tssr159525	transcription start site region 159525	420 bp upstream
Tssr159526	transcription start site region 159526	401 bp upstream
Tssr159527	transcription start site region 159527	1280 bp downstream
Tssr159528	transcription start site region 159528	1298 bp downstream