rs216059370 SNP Detail

Summary

• ID
  rs216059370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:69344758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTACCTC CTTAAACCGC
  TGCTCACTGG TTCTTCTGTA CTGGTTTTAG AATTCCATGA TACACTCACT CTAGTTCTTG
  GATTTCATGT GGTGCACACT CATTTGAGCC ATTTGACCTA AAACTATTTT AGTGTTAAAA
  TGACGCCCCC CCACCCCCCT TGGGAAGTCC AGTTCTCTGC GCCTGTGGTT TGCTTAAGGA
  Y
  TCTAATAGCT TATAGTACTG ACGACCTGAT CATAGGTGGC CATTTTGAGA CAACTGTCCC
  ATACCTTGTC GGTTTAACCA TTAGTTATTT TGCCAGCGTG AATTAATGCA TTCTGTTGTC
  CCTGGCTTCC AGGAATCAGG TATTTAGAGG TCGATGTCGA GAATTCTAGA GATTAGAGAG
  CAGGTGTGTA GTGACTATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386384145	MGP_WTSI_12_70398971	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216059370					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386384145	MGP_WTSI_12_70398971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69344758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	445 bp distal
Klhdc2	kelch domain containing 2	Intron
Rr467020	regulatory region 467020	1252 bp distal
Rr467021	regulatory region 467021	within coordinates
Rr467022	regulatory region 467022	1245 bp proximal
Tssr113629	transcription start site region 113629	1992 bp downstream
Tssr113630	transcription start site region 113630	1186 bp downstream
Tssr113631	transcription start site region 113631	1080 bp downstream
Tssr113632	transcription start site region 113632	1051 bp downstream
Tssr113633	transcription start site region 113633	1041 bp downstream
Tssr113634	transcription start site region 113634	1013 bp downstream
Tssr113635	transcription start site region 113635	994 bp downstream
Tssr113636	transcription start site region 113636	538 bp downstream
Tssr116496	transcription start site region 116496	739 bp upstream