rs216064399 SNP Detail

Summary

• ID
  rs216064399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135695014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTTTCC CTAGGGCACC
  AGGCAGGAGG GTCCTTAATG TAACCCAAGT GTCGGAGAGG AAGATGGGTG GGAGCACGGA
  GAGAGAGCAC GGGTGGGATA GGCCTCCTCA GAGATTGGTT CACTCACCAT AGGACTCCTG
  CGTTGTATGA CTGTCTTCCA GAATGAATGC ATGCTGGAGA ATGTAAGTGT TGAACTGCGA
  K
  GACAACTCAC TACGGTGTAG TTATCGAAGG AGTTATAAGG GCTTGCGAAC AAAACCATGC
  TGTCTTAGGT CCCTACGTGG GGCCTCAGTG GAAGGCTGGG CTGAGCCAAT GGCTTCAAAA
  ACTCATTCTT GATAATGGAT CTGGGGCTCC AGGGCTGAGG TGTGGGAGCA TAAAGGAGTG
  TGAGATGTGG AATGTGAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351549761	MGP_WTSI_1_137663853	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216064399					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351549761	MGP_WTSI_1_137663853	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135695014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	298 bp distal
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	329 bp downstream
Tssr223	transcription start site region 223	1197 bp downstream
Tssr224	transcription start site region 224	1075 bp downstream
Tssr8974	transcription start site region 8974	1101 bp downstream
Tssr8975	transcription start site region 8975	1068 bp downstream
Tssr8976	transcription start site region 8976	1051 bp downstream
Tssr8977	transcription start site region 8977	1036 bp downstream
Tssr8978	transcription start site region 8978	1019 bp downstream
Tssr8979	transcription start site region 8979	533 bp upstream