rs216072306 SNP Detail

Summary

• ID
  rs216072306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88242537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAACCAA CATTAAAGTT
  CACACCAAAT CAGTAGTAGA ATTTCAGTAG TGAGAGCCTC TTTAGGGTGA CTGAAGCTGA
  AACCCAGTGG AAGTTCCCTG TAGAGGAACA GCGCAGCCAA CAGATGGAAA AAGACTTGAG
  GCAGTTTGAG GAATAGAAAG GAGACTTGGT GGCTGGAGCC AGGAGCATAG TGGTATATAC
  R
  TTGCCATTAT AATGTGGAGA GAGAGAGAGA GAGAGAACCC CAAAGATCCG CCTTATAGTT
  AGGAAAACAA TAGGGCTGAC AAGATGGCTC ACCAAGCCTG ACTACCTGAG TCTGATTCCC
  CAGAGAACCA CACTTTTAAA AGAAAACTGA CTCTCCCAAG TTCTCTGGCC ACGTGTATGT
  TGTATGCATG CACCCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358793935	MGP_WTSI_3_88139152	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216072306					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358793935	MGP_WTSI_3_88139152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88242537 () rs orientation: forward

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	within coordinates
Cpgi13370	CpG island 13370	1822 bp distal
Cpgi13371	CpG island 13371	598 bp proximal
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	230 bp distal
Gm65350	predicted gene, 65350	492 bp downstream
Rr579717	regulatory region 579717	1569 bp distal
Rr579718	regulatory region 579718	973 bp distal
Rr579719	regulatory region 579719	236 bp distal
Rr579720	regulatory region 579720	540 bp proximal
Rr579721	regulatory region 579721	1041 bp proximal
Smg5	SMG5 nonsense mediated mRNA decay factor	1030 bp upstream
Tmem79	transmembrane protein 79	776 bp upstream
Tssr29942	transcription start site region 29942	1026 bp upstream
Tssr34001	transcription start site region 34001	764 bp upstream
Tssr34002	transcription start site region 34002	735 bp upstream
Tssr34003	transcription start site region 34003	935 bp downstream
Tssr34004	transcription start site region 34004	1268 bp downstream