rs216077453 SNP Detail

Summary

• ID
  rs216077453
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98851840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGCAAAG GCAGCTAGCC
  GAGCATCCAT TATGGGGTGG AGTTGGGGAG GGGTGGAAAG GGAAGAAAGA AAACTGGGGT
  TGGATGATTA TACGTAGTTT AAACCTTAAA CTGTATTTAA AAATCATCTA AGGTTTTTCC
  CAACACTTAA TCACAGAATT TATGTTTAGA ATCTTTTTGG AAAATTCCAG CTTTTCATTT
  W
  TAATATACTG AATTTAATTA CGTTCTGTCA GAATTCAACA TCTCTATTTG CTTTAAAAAG
  TAGCAGAAGA TACGGGGGTG GTCAAAAAGG CGTGGCTGAA TGTTTAGTTT CATAGTTATT
  GTATTATTGT TATTCTTTAT TATTATTTGA GCAAAAGTCA GTACGAGTAG ACCACGCCTG
  TGACCTCAAC AGCACCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395146346	MGP_WTSI_15_98784390	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216077453					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395146346	MGP_WTSI_15_98784390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98851840 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	1422 bp upstream
Cpgi7685	CpG island 7685	243 bp distal
Gm49450	predicted gene, 49450	408 bp upstream
Gm56698	predicted gene, 56698	606 bp downstream
Rr370012	regulatory region 370012	632 bp downstream
Rr404613	regulatory region 404613	188 bp downstream
Rr509236	regulatory region 509236	692 bp distal
Rr509237	regulatory region 509237	419 bp distal
Rr509238	regulatory region 509238	299 bp distal
Rr509239	regulatory region 509239	within coordinates
Rr509240	regulatory region 509240	1235 bp proximal
Tssr132970	transcription start site region 132970	885 bp downstream
Tssr132971	transcription start site region 132971	190 bp downstream
Tssr136334	transcription start site region 136334	440 bp upstream
Tssr136335	transcription start site region 136335	426 bp upstream
Tssr136336	transcription start site region 136336	399 bp upstream
Tssr136337	transcription start site region 136337	368 bp upstream
Tssr136338	transcription start site region 136338	352 bp upstream
Tssr136339	transcription start site region 136339	300 bp upstream
Tssr136340	transcription start site region 136340	283 bp upstream
Tssr136341	transcription start site region 136341	260 bp upstream
Tssr136342	transcription start site region 136342	1500 bp downstream
Tuba1a	tubulin, alpha 1A	458 bp upstream