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rs216086300 SNP Detail
Summary
  • ID
    rs216086300
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:93730617 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTAACACC CAAAGAAGTG
    ACACAGATGC CAGACACATA TGTAAAAATG TGCAACACAA ACATATTGTT AGGAATCATG
    AATTAAGATA ATTTCACCTC TTCGAGAATA GCCCAAATCT ACAATTCTAA CCCTTCATCA
    TGCTGGTGAG GACGTGGAGC GAAGGAGACT GTCAGTGCAG AGGAGAAGGC AAAAACGGTG
    Y
    GGAAGATAGC TTGGCTGTTT CTCAAGAAAG CACTCTACTT TTAACATGAA GTCAATATTT
    ACCCAAATGG GTTGGAAACT ATGTCTGCAC ACAAATGATT GTATCAGCTC TAGCCACATT
    TGCCTAAATA TGGAAGCAGC TAAGATGTCC TCCAACACGC AAACTGATAA ACTGGTAATT
    ACACAGTGAA ATAATTTTGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss350526649 MGP_WTSI_1_95699472 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216086300 SNP T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss350526649 MGP_WTSI_1_95699472 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:93730617 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi608 CpG island 608 603 bp distal
Cpgi609 CpG island 609 540 bp proximal
Dtymk deoxythymidylate kinase 961 bp upstream
Gm57164 predicted gene, 57164 268 bp downstream
Gm70929 predicted gene, 70929 within coordinates
Ing5 inhibitor of growth family, member 5 1070 bp upstream
Rr29859 regulatory region 29859 within coordinates
Rr366972 regulatory region 366972 753 bp downstream
Rr396180 regulatory region 396180 801 bp upstream
Tssr8200 transcription start site region 8200 728 bp downstream
Tssr8201 transcription start site region 8201 1050 bp upstream
Tssr13052 transcription start site region 13052 950 bp upstream
Tssr13053 transcription start site region 13053 875 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory