rs216099494 SNP Detail

Summary

• ID
  rs216099494
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66212232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGGAGA CAGTGGGGTG
  GTTTAAAGGA GAGGTGGGGC CTAAGGAAGA GACGGTCAGA GCAGCAGATC AGAGTGGACA
  GGGAAGCTTA GGGAATGGCT GGGCCTTGAA GAAGGAGAGG CTCCTGAGAG CGTGGCTGGG
  GAGGCCCAAC AGAAGGGCTA GAGCGAAGCT GTGGGCACCA GGAGCAACCT TGTACTCAGA
  K
  CGGGGAGACC GGCTGGGTCT CTGTGTGGGT CACCTGGCCT TCTTGTCATC TCCCTGAAGG
  ATGCTCTGGA GGACACTAGG GATTCTGAAA TGAAGCTGAA GGCATTCCCG GAAGTGTGTA
  ACGAGACCAT GATGGCCCTC TGGGAGGAGT GCAAGCCCTG CCTGAAGCAT ACCTGCATGA
  AGTTCTATGC ACGTGTCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367408	MGP_WTSI_14_66593620	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216099494					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367408	MGP_WTSI_14_66593620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66212232 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	1456 bp downstream
Tssr126264	transcription start site region 126264	1415 bp downstream
Tssr126265	transcription start site region 126265	1387 bp downstream
Tssr126266	transcription start site region 126266	1348 bp downstream
Tssr126267	transcription start site region 126267	521 bp downstream
Tssr126268	transcription start site region 126268	54 bp upstream
Tssr126269	transcription start site region 126269	140 bp upstream
Tssr126270	transcription start site region 126270	799 bp upstream
Tssr126271	transcription start site region 126271	817 bp upstream
Tssr126272	transcription start site region 126272	842 bp upstream
Tssr126273	transcription start site region 126273	869 bp upstream
Tssr126274	transcription start site region 126274	913 bp upstream
Tssr126275	transcription start site region 126275	922 bp upstream
Tssr126276	transcription start site region 126276	955 bp upstream
Tssr126277	transcription start site region 126277	1020 bp upstream
Tssr126278	transcription start site region 126278	1056 bp upstream
Tssr129260	transcription start site region 129260	1424 bp upstream
Tssr129261	transcription start site region 129261	1385 bp upstream
Tssr129262	transcription start site region 129262	1372 bp upstream
Tssr129263	transcription start site region 129263	1356 bp upstream
Tssr129264	transcription start site region 129264	1303 bp upstream
Tssr129265	transcription start site region 129265	78 bp downstream
Tssr129266	transcription start site region 129266	113 bp downstream
Tssr129267	transcription start site region 129267	145 bp downstream
Tssr129268	transcription start site region 129268	207 bp downstream
Tssr129269	transcription start site region 129269	915 bp downstream
Tssr129270	transcription start site region 129270	936 bp downstream
Tssr129271	transcription start site region 129271	980 bp downstream