rs216108941 SNP Detail

Summary

• ID
  rs216108941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108534218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTGGGG AAATTAATGT
  TTTCTTCCTG TGCATCTTAC TATTCCTCTC GTTCCATCGC CCCTGAACTC TTAGCCTGTT
  TCTCTTTTTG CACCTTCCTA CTGTGGCTTG CCTTCCCGAG TGATCTGAAT TCAGCCGAAT
  TGCCGTTAAG CCACAGAAAT GTGCAAGGAG TAGGTATAAG CTATTGCGTA GTTTGTGATA
  Y
  TTGATCTACA TGTTATTTTA TACTCCCAAC AACGTGGTAC TGAGAGGGCA TGCTGCCAAA
  AATGAAAGCT CAAATGACAG CAAGTTCAAA GCCCTTGACC CGTTAAACAG AGTACCCACA
  TGCCCTCTCT TATGCAGTGA CCTACCACCA CCCCAGCACA AACAGAAAGT GCCCACCACC
  CATGTTAGGG AAGAGGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388643	CHEV_7_116078525	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216108941					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108534218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	102 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	within coordinates
Rr400539	regulatory region 400539	553 bp downstream
Rr652952	regulatory region 652952	584 bp distal
Rr652953	regulatory region 652953	841 bp distal
Tssr68456	transcription start site region 68456	581 bp downstream
Tssr68457	transcription start site region 68457	483 bp downstream