rs216117421 SNP Detail

Summary

• ID
  rs216117421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105828911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTAGCTA AAAGGAACCA
  CCCATGACCT GTCCCCGGGA CTGCCACCTC TTCCACCCCA GGGCCTAAGC CGTGCACGCC
  TCTGTTCACT CTCCCACCAT TAAGACCCAT GCCCACATCC TTGGGCAGAG TCCCAACATC
  CCAGGAACAC ATCAGCAGGA GGCCAGGCCT TCCCACACAG ACAAACTTGA CCTGGGTTCT
  R
  TGTATAAGGG AAGGCACAAG TTTGAAAACA TCCTGAGTTC TAATGACAGC ATGGCCTCCA
  TCCCGGGGTT ACAGTTCCTA TTTTCAGAGG TCCTGCATTT TCTGGGGTAG GGCTGACAGA
  TGTGTTGAAA ATGCAAGCAA ATCCCCTTCT TTGTCCAGGT CAATGGGAAA GTCCTTCCCG
  GGTGAGAAGT AGAAGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384578862	MGP_WTSI_11_105799399	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216117421					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384578862	MGP_WTSI_11_105799399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105828911 () rs orientation: forward

Symbol	Name	Function Class
Cyb561	cytochrome b-561	within coordinates
Rr238672	regulatory region 238672	290 bp proximal
Rr248093	regulatory region 248093	912 bp distal
Tssr111265	transcription start site region 111265	1784 bp upstream
Tssr111266	transcription start site region 111266	1769 bp upstream
Tssr111267	transcription start site region 111267	1743 bp upstream
Tssr111268	transcription start site region 111268	1595 bp upstream
Tssr111269	transcription start site region 111269	1561 bp upstream
Tssr111270	transcription start site region 111270	1171 bp upstream
Tssr111271	transcription start site region 111271	1152 bp upstream
Tssr111272	transcription start site region 111272	214 bp upstream
Tssr111273	transcription start site region 111273	475 bp downstream
Tssr111274	transcription start site region 111274	883 bp downstream
Tssr111275	transcription start site region 111275	1869 bp downstream
Tssr111276	transcription start site region 111276	1902 bp downstream