rs216127561 SNP Detail

Summary

• ID
  rs216127561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTTTTTC TGGAGAGTTA
  GAGCTGAGTA AGACAAAGCA CGTCCCCCGC AGGCGCCATG GAGCTGCTGT CCCGCGTCCT
  GCTGTGGAAA CTGCTGCTTC TTCAGAGTGA GTGTGAGAGT GGGACTGGGC GTGGGGCAAC
  GAGTGGATGA ACTGTCTGGG TTTAGGTTGG GAGGGGTGGA GAAAAGGACT GGGCTGGGTG
  Y
  TCAAAATAGC AATTCGCTTA GAGCAATTCG CGAAGCCTTC AGGTACTCCA AAAGAAATCC
  CAGAGGTCTT AAGTGGGGAG GATGTGGCCA AGGGTGCCTT CTGTACCCAC ATTCTGTGTG
  GCTCCAGGGT CAGCTGCTCA GGATGCATTC CTCCTTGATG TGGGGAGGGA AGTGGACTGG
  GGCTGACAAC TAAGGGGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363804818	MGP_WTSI_4_155214094	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216127561					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804818	MGP_WTSI_4_155214094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	827 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1199 bp upstream
Rr606588	regulatory region 606588	1750 bp distal
Rr606589	regulatory region 606589	249 bp distal
Rr606590	regulatory region 606590	183 bp proximal
Rr606591	regulatory region 606591	1099 bp proximal
Rr606592	regulatory region 606592	1126 bp proximal
Rr606593	regulatory region 606593	1162 bp proximal
Tssr40724	transcription start site region 40724	301 bp downstream
Tssr40725	transcription start site region 40725	281 bp downstream
Tssr40726	transcription start site region 40726	223 bp downstream
Tssr40727	transcription start site region 40727	161 bp downstream
Tssr40728	transcription start site region 40728	145 bp downstream
Tssr40729	transcription start site region 40729	1116 bp upstream
Tssr40730	transcription start site region 40730	1136 bp upstream
Tssr40731	transcription start site region 40731	1161 bp upstream
Tssr40732	transcription start site region 40732	1183 bp upstream
Tssr40733	transcription start site region 40733	1427 bp upstream
Tssr44980	transcription start site region 44980	1043 bp downstream
Tssr44981	transcription start site region 44981	1109 bp downstream