rs216142888 SNP Detail

Summary

• ID
  rs216142888
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCAGGCA GCCGAGCAGG
  TGAGTTGAGG GGCCCCTGTA ATTATAGCCT TTCCGCCTCT GGAAACCTCA TCCCCCAGAG
  CCGGAAAGGA ACAAAAGCCT TCCAGAACAA CCTCAGAGGC CCCAACTAAT TGCCCCTGGC
  CTGGCAGGCA GTTTTAAAAG CTCCCAGGGC AGGTTTTCAG AGCCACCCAT GGGTGGGGCT
  M
  TGCTCTTTAT GAGATCTCCT TATTACCCAA GATCATCTTT TAACCCTTTG TGAAGACTTC
  TTCATTTGTG TTTTCTTTTA CCTCGCCTCC TGGATAAAGT TTCTCTGCAC CATAAACCCT
  TGTATCCAGT TGTAAAATGC CTATTATGGC TTCCAGGAAC TTACGCAACA TCCTATCAGT
  TTGGCCTGCT CAAAGAACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351957042	MGP_WTSI_1_154655517	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216142888					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351957042	MGP_WTSI_1_154655517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684138 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1463 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	597 bp downstream
Tssr9424	transcription start site region 9424	561 bp downstream
Tssr9425	transcription start site region 9425	511 bp downstream
Tssr9426	transcription start site region 9426	489 bp downstream
Tssr9427	transcription start site region 9427	471 bp downstream
Tssr9428	transcription start site region 9428	453 bp downstream
Tssr9429	transcription start site region 9429	428 bp downstream
Tssr9430	transcription start site region 9430	1720 bp upstream
Tssr14234	transcription start site region 14234	74 bp upstream
Tssr14235	transcription start site region 14235	1537 bp downstream