rs216144143 SNP Detail

Summary

• ID
  rs216144143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGCTTG CAGTGTTTCC
  CAGGCAGTCT GATGGTGGTA GCAGTTCAAA GATTTTTTAA AAATCTCTTT AGAGGCTAAA
  GGATAGAACT GGCAACTGGA GCTCATTTGC TTGCTGCGTT TCCCAGGCAG CCTGTTCCTA
  GTAGAGACTC CATAAAGATT TTTATATCTG AATGAGTATC CAGTGGTTAA GCGATAGAAC
  Y
  GGTAACTAAA CTCCATCAAA TACAAAGCTA TGCCTAAATT AATTTAGGCA CCAGAGTGTT
  GTTTTAGAGA AAACTGCCTA AATTAACAAA TCAAAGCAGC CAATAGTGTG ACCTTATTTT
  TAGCCACATC TTTATTTTGG GTAAATAAAC TATACCTAGC AAGATACCGA AGTCAAATTT
  GACTTTATGG AGAGAAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388876233	MGP_WTSI_13_64255744	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216144143					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388876233	MGP_WTSI_13_64255744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	769 bp distal
Cpgi5774	CpG island 5774	198 bp distal
Gm47513	predicted gene, 47513	within coordinates
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1559 bp downstream
Rr273318	regulatory region 273318	751 bp proximal
Rr281559	regulatory region 281559	within coordinates
Rr403820	regulatory region 403820	1957 bp downstream
Rr403821	regulatory region 403821	799 bp downstream
Tssr120196	transcription start site region 120196	716 bp downstream
Tssr123017	transcription start site region 123017	1981 bp upstream
Tssr123018	transcription start site region 123018	1688 bp upstream
Tssr123019	transcription start site region 123019	1291 bp upstream
Tssr123020	transcription start site region 123020	1247 bp upstream
Tssr123021	transcription start site region 123021	1229 bp upstream
Tssr123022	transcription start site region 123022	1159 bp upstream
Zfp367	zinc finger protein 367	1237 bp upstream