rs216148041 SNP Detail

Summary

• ID
  rs216148041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92286978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGATA GGATGGAGTC
  TTTACTAATG AAGAGAGAAT TAAAGTAACT TGACCAGAAT CTTGGAGCTA GAATTTACTA
  CGGGGGAAAC TAAGAAACTA AGCTTTCTGC TAAGCTTAGA CTTGATTGCT GATCCCGGGT
  TTCAGTTGTT AGCTGGCCCT TTTGGAAATA AGATTACCCA CATTAATTAA GTTAGGATTA
  M
  GTTAACTAAC GAATGTAGTG TACTAATGTA GTTAGTGTAG TTTACGCATG TAGTTAGTAC
  TGAGGGAGAT GGAGGAGGCC TAGGACTGAA TCCAGGGCCT GATTACATGG AGGGCAAGCA
  TTCTGCCACT GAGCCAGACT TCCCACCAGG TTACAACGGA GCTGAAGGCT GTCACATGTG
  TTGTTTTTGA AAATCAGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365876684	MGP_WTSI_5_92568145	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216148041					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365876684	MGP_WTSI_5_92568145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92286978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16052	CpG island 16052	476 bp distal
Gm15710	predicted gene 15710	1175 bp downstream
Gm71614	predicted gene, 71614	1394 bp upstream
Rr399160	regulatory region 399160	1073 bp downstream
Rr614570	regulatory region 614570	1405 bp distal
Rr614571	regulatory region 614571	1720 bp distal
Rr614572	regulatory region 614572	1163 bp distal
Rr614573	regulatory region 614573	422 bp distal
Tssr47284	transcription start site region 47284	1249 bp downstream
Tssr47285	transcription start site region 47285	1180 bp downstream
Tssr47286	transcription start site region 47286	1145 bp downstream
Tssr51846	transcription start site region 51846	1417 bp upstream
Tssr51847	transcription start site region 51847	1357 bp upstream
Tssr51848	transcription start site region 51848	1333 bp upstream
Tssr51849	transcription start site region 51849	1846 bp downstream
Uso1	USO1 vesicle docking factor	within coordinates