rs216152066 SNP Detail

Summary

• ID
  rs216152066
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97148741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGTCTG TGAGGTTGGA
  TGCCTCAGCA GACCCAGCCT GCCTCTGAAG GCTTAGAGCT GGATTCTGCT ATTAACAGAG
  GAATACAGCA GCGATGGCAG CAGTGGGGTA GATGACCTTG CCAGTGAGAG CAAGGGCCAG
  CAGGCAAAAA GCAAAGTTTT CATCAGTGCT GCCATAGGGG GGTGGGGATG GGGGTGGGGG
  T
  GGGGGCTGTC CACATCCAGG CTGGGTCTTC TCATCTCAGA TAACCTGATT GAGAAGGTCC
  CTCACGGGTT TGCCCAGCGT GCTTTGCCTT TTAGGTGATT CCAGATCCAG TTCGTATGAC
  AAGCAAGATT AACCATAACA AATAGTCGCT TTGGCTAATA CTAACATTCA GTAGGGCTTC
  CTCGCCTGTG TGGGGTTTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ
ss395107869	MGP_WTSI_15_97081291	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ
rs216152066					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395107869	MGP_WTSI_15_97081291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97148741 () rs orientation: forward

Symbol	Name	Function Class
Gm57814	predicted gene, 57814	1698 bp upstream
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	1341 bp distal
Rr308785	regulatory region 308785	941 bp distal
Rr308786	regulatory region 308786	660 bp proximal
Rr312356	regulatory region 312356	1940 bp distal