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rs216173393 SNP Detail
Summary
  • ID
    rs216173393
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:25351349 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGGGGCGGG GCGGGAAGCA
    CTCGGAGGGC GGGGCTTAGC GCATTAGCTA CTCAGTGCTA TTCTGGGCTC TGTTCTTTGG
    CCCTTGCATC CAAACAGAGA TCTACTATGG TCTCACTCCT TGTGCTCTTC CGCTTTTCTG
    GGTCCTTCTT AGCAACATAT CTGCCGCTCT TCAATGCCGG TCTTCTTTCC TATCTATCCC
    Y
    CAAGGGCTTG TACTGCAGGG CCTCCAAACT GTTGGTCACT TGTCCCTTCC TGTCACTTTA
    GATATAAACA CATCTCTTTC TAAAGCTGAG TTGTAACAAA CCAAAATACA AGAGTAAGTA
    CAGTACATGT GGAAACGTTT GGAGATGCAG TTTTCTCCCG GGCAATACCC TCCCATTGTC
    TGAGTCACCA CCCTCTGTGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353409462 MGP_WTSI_2_25316857 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216173393 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353409462 MGP_WTSI_2_25316857 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:25351349 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11321 CpG island 11321 33 bp distal
Gm74786 predicted gene, 74786 within coordinates
Paxx non-homologous end joining factor 243 bp upstream
Rr42075 regulatory region 42075 1949 bp distal
Rr56431 regulatory region 56431 within coordinates
Rr396822 regulatory region 396822 143 bp downstream
Tssr16724 transcription start site region 16724 116 bp downstream
Tssr22977 transcription start site region 22977 406 bp upstream
Tssr22978 transcription start site region 22978 378 bp upstream
Tssr22979 transcription start site region 22979 354 bp upstream
Tssr22980 transcription start site region 22980 333 bp upstream
Tssr22981 transcription start site region 22981 297 bp upstream
Tssr22982 transcription start site region 22982 257 bp upstream
Tssr22983 transcription start site region 22983 225 bp upstream
Tssr22984 transcription start site region 22984 208 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory