rs216175065 SNP Detail

Summary

• ID
  rs216175065
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112640663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGC GCTGGGCCGG CCGCCCGCCG
  M
  CTCGGTGCTG CCGCCGCCGC CGCCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss643253194	FVB_NJ_12_113912440	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	C	A	A	C	C	C	A	C	A	A	A	A	A	C	A	A	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs216175065					SNP	C	A	A	A	C	A	A	C	C	C	A	C	A	A	A	A	A	C	A	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643253194	FVB_NJ_12_113912440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112640663 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	within coordinates
Gm30150	predicted gene, 30150	259 bp upstream
Rr369631	regulatory region 369631	1201 bp upstream
Rr473552	regulatory region 473552	1300 bp distal
Rr473553	regulatory region 473553	within coordinates
Rr473554	regulatory region 473554	37 bp proximal
Rr473555	regulatory region 473555	150 bp proximal
Rr473556	regulatory region 473556	193 bp proximal
Rr473557	regulatory region 473557	753 bp proximal
Rr473558	regulatory region 473558	1218 bp proximal
Rr473559	regulatory region 473559	1409 bp proximal
Rr473560	regulatory region 473560	1655 bp proximal
Tssr115391	transcription start site region 115391	183 bp upstream
Tssr117877	transcription start site region 117877	202 bp upstream
Tssr117878	transcription start site region 117878	143 bp upstream
Tssr117879	transcription start site region 117879	within coordinates
Tssr117880	transcription start site region 117880	114 bp downstream
Tssr117881	transcription start site region 117881	145 bp downstream
Tssr117882	transcription start site region 117882	524 bp downstream
Tssr117883	transcription start site region 117883	545 bp downstream
Tssr117884	transcription start site region 117884	597 bp downstream