rs216177611 SNP Detail

Summary

• ID
  rs216177611
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTTAT TAAAATTTAT
  TGTGGAACAA GGAGCAGATA TGAAAGCTGC AGGAGAGAAC CTCCATTCAT AGAGTGTCTG
  GCTCTGGATA ACAGCAGGTA CTACTAGCTT CAATCAATTT TAAATGTCGT TCTTTAAATG
  TTAATTCTTT CATTCATCCA TTCACTTTAC ATACTTATAA CCATTTACAC ATCCTCCTCT
  C
  CTACTCCTTT CCTATTTTCC CCTCTTTCCC ATCCACTATT CCTTCCTTCT TCAGAAAAAA
  AGGAGCCCTA CACCCCCTTC CCCCAGATAT CTACATGCTT TGGCATACCA TGTTGCTCAA
  TAACTAGGCA CAGATTGGTG TTCTCTTTCA GAGGTCATGA AAGGCAGCCC AGAAGGGATA
  AAGTATCCCA GAGAAAGCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss397836699	MGP_WTSI_17_23653577	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs216177611					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836699	MGP_WTSI_17_23653577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735584 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	826 bp downstream