rs216178934 SNP Detail

Summary

• ID
  rs216178934
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACTAAT GGCAATATAT
  TACAGTAGTC ACTATGAGTT TGCTTGCTAC TATGCTAGGC TTCAAATAAG CCATGAGAAA
  TGAATACTTC CTCTGAGGTA TTTGCAGCAT TGTGACGAGA AAATAATAGA CACATGATAA
  GTATTTCATG GTAAAGAGAT GGTAAGTATT TCATGTGATA CTCTCAGGTA AATTTAAGAT
  K
  TCATTGTATC CTGTTGATTC TTATTTATGT AAATGACAAC TTTAATAACC AAATATGTCC
  TTCTGCAAGC CAGCCTAGCT ACTATAGAAT AGGCATGTCA TTTCTAGTAG TCTTTAGTTG
  GTACTATAGT TCCTAGGCAA TGAGTGTCAA AAGGCACACA GTGAATATTA ATAATCCAGG
  TCAGATTAGG GAGAGCTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777328	MGP_WTSI_5_88125730	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216178934					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777328	MGP_WTSI_5_88125730	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844564 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr46889	transcription start site region 46889	1986 bp downstream
Tssr46890	transcription start site region 46890	1953 bp downstream
Tssr46891	transcription start site region 46891	1940 bp downstream
Tssr46892	transcription start site region 46892	1911 bp downstream
Tssr46893	transcription start site region 46893	1885 bp downstream
Tssr46894	transcription start site region 46894	1840 bp downstream
Tssr46895	transcription start site region 46895	1820 bp downstream
Tssr46896	transcription start site region 46896	1741 bp downstream
Tssr51627	transcription start site region 51627	1985 bp upstream
Tssr51628	transcription start site region 51628	1875 bp upstream
Tssr51629	transcription start site region 51629	1781 bp upstream
Tssr51630	transcription start site region 51630	1733 bp upstream
Tssr51631	transcription start site region 51631	1694 bp upstream
Tssr51632	transcription start site region 51632	1435 bp upstream
Tssr51633	transcription start site region 51633	631 bp upstream
Tssr51634	transcription start site region 51634	526 bp upstream
Tssr51635	transcription start site region 51635	434 bp downstream
Tssr51636	transcription start site region 51636	460 bp downstream
Tssr51637	transcription start site region 51637	573 bp downstream
Tssr51638	transcription start site region 51638	1349 bp downstream
Tssr51639	transcription start site region 51639	1356 bp downstream