rs216180743 SNP Detail

Summary

• ID
  rs216180743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108218676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATGTAA TGCTTTTACC
  GCTGAACCAT GTCCATAGCC CTTGGTTGTT TTAAGACTGT AGCTCAAGGT GACCCCCAGC
  TCCCAGCAAT TCTGGCTCTG TCTCTTGATT GCTATGATGA CTGTCATCAT GCTGGCCAGC
  CTGTAATAAC ATCCTCCTAT CTCCACCAAT TGCTGGGATT ACAGGTGAGA GCCACTATGT
  Y
  CCCTGTTAGT TTACTTTTGC TTCTTTCGGA GATCAGGTCT GTCCTCAGAC TCCTGATCCA
  CCTGCCTGCC CACTGCCTAA GTGCTGGAAA TATGGATATG GACAACCAAG TATACACAAA
  AATATACACA TTTGTTTTTC CTTTTTTTGA CAGAGTTTTC TTATGTAGCC CTGGCTGGCC
  AAGAATTCAT TGTATAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864998	MGP_WTSI_9_108243808	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216180743					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864998	MGP_WTSI_9_108243808	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108218676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	1302 bp distal
Gm57050	predicted gene, 57050	1343 bp upstream
Gpx1	glutathione peroxidase 1	1135 bp downstream
Rr383883	regulatory region 383883	1659 bp downstream
Rr686786	regulatory region 686786	853 bp distal
Rr686787	regulatory region 686787	148 bp proximal
Rr686788	regulatory region 686788	1269 bp proximal
Tssr3010	transcription start site region 3010	1727 bp downstream
Tssr87097	transcription start site region 87097	1557 bp downstream
Tssr87098	transcription start site region 87098	1490 bp downstream
Tssr87099	transcription start site region 87099	1161 bp downstream
Tssr91519	transcription start site region 91519	1584 bp upstream
Tssr91520	transcription start site region 91520	1493 bp upstream
Tssr91521	transcription start site region 91521	1397 bp upstream
Tssr91522	transcription start site region 91522	1321 bp upstream
Tssr91523	transcription start site region 91523	1136 bp upstream