rs216186260 SNP Detail

Summary

• ID
  rs216186260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52260219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTACAG ATTCTGTTAG
  CCACTATGTG AGTTCTAGGA ACTAAATTCC TCTTCAGCAA ATACTCTTAT CTACTAAGCC
  ATCTCTCCAG TCTCCTTGCC TACCACCCCT CATGCCAGTC TGTTATATTT TTGTATACAA
  TATTTGCAAG AACACTGAGA AAACTCCAGG CTATTTTCTC TAATGATACT TCTCCCTGCC
  Y
  GCTGAGGAAC ATGAAATAAA TAAATAAAAC TTACTGTGTG AGAATGGGGA AATACTTGGA
  ACAATAACGA TACCTTTTAA TTAAGAATGC TCTATGTATA GAGTTATTTC TTTGATTCTC
  AAAGCATCCT ACAGTAAGTA TAATTACTCT TTTATAAGTA CATTGTAGAC AGATTAAATG
  TTTTAGTAAT GGCACACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323303497	CHEV_10_52103929	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216186260					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52260219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1535	CpG island 1535	1592 bp distal
Gm67152	predicted gene, 67152	within coordinates
Gopc	golgi associated PDZ and coiled-coil motif containing	1999 bp upstream
Rps19-ps10	ribosomal protein S19, pseudogene 10	536 bp downstream
Rr431353	regulatory region 431353	1844 bp distal
Rr431354	regulatory region 431354	771 bp distal
Rr431355	regulatory region 431355	1062 bp proximal
Rr431356	regulatory region 431356	1332 bp proximal
Tssr97578	transcription start site region 97578	1981 bp upstream