rs216187056 SNP Detail

Summary

• ID
  rs216187056
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14950742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTAGTATA AGAACAAGGA GATCTACATG
  TGCATCATCT TTGTGTGGCA CTGGGTGAAA TAAAGGCACA TGATGAGTCT GAGAACACTT
  AAAATGTAGT CAGATATTTT TCATTATACT TACACATAGA TTCTAATATA TAGGTAATGT
  K
  ATGTCTAGGT GCCTCCATAG AAACACAAAA AAACTGTACC CTTCTCAATT TGAATTCTAA
  ATAATATGGC CTCAGGTCCA CAATAGATTC AATACAAAAA AATTGTTCTC AAAGTCAAAT
  AAGAAAAAAA GTGTTAGGTG AAGAGAAATG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320667954	CHEV_3_14885682	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216187056					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14950742 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	591 bp upstream
Cpgi12992	CpG island 12992	333 bp proximal
Rr573722	regulatory region 573722	305 bp proximal
Rr573723	regulatory region 573723	457 bp proximal
Rr573724	regulatory region 573724	757 bp proximal
Rr573725	regulatory region 573725	804 bp proximal
Rr573726	regulatory region 573726	1487 bp proximal
Rr573727	regulatory region 573727	1540 bp proximal
Rr573728	regulatory region 573728	1722 bp proximal
Tssr826	transcription start site region 826	522 bp upstream
Tssr827	transcription start site region 827	736 bp upstream
Tssr828	transcription start site region 828	752 bp upstream
Tssr829	transcription start site region 829	842 bp upstream
Tssr830	transcription start site region 830	923 bp upstream
Tssr831	transcription start site region 831	944 bp upstream
Tssr832	transcription start site region 832	1033 bp upstream
Tssr28466	transcription start site region 28466	1001 bp upstream
Tssr28467	transcription start site region 28467	1133 bp upstream
Tssr28468	transcription start site region 28468	1706 bp upstream