rs216187844 SNP Detail

Summary

• ID
  rs216187844
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36007267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGAGGA AGAAGACCAG
  CATCACTGGG ATAAAATCTT CTGGGAAGTG TTTTCAGAGA ACATGAAGAA GCTGTGAGAG
  GCCAGAAAAC ATTATTGGTG AAGGTGTAGG CTTAGTTGCA GCTGACATCC CAAGACAGAA
  GGGGTCATGC AAAGAAGTTG TGAGTTGGCA CTATGAAGAG AGCCTATGAG AGACTAGTGG
  W
  GAAGCTTAGT TGTAGAGTAA GATCCCAATG TATTAGATGC CAGTGCAATG TGATGACCAC
  CAAGAATAGA AGCAACAGTG GAGTGGAGTG AACTAGAGCC TAGAGTTCTT CAAAGGGCAG
  AGCTGGAGAA GCTACCCAAG TCCTTTGGAG GAGTCTAAAA TAACATGTTT GGATCTCAAA
  TAGTGGAACA AGAAGCTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084836	CHEV_4_35954300	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216187844					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36007267 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	1260 bp upstream