rs216201200 SNP Detail

Summary

• ID
  rs216201200
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30854890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGCAAA GAAGAGTGAT
  GAAAGCGGGC GGAGTGGCCT GAGTGTGCAT CTCATTGGGT GCCGGGTACT GGGTGGTTTA
  ACTGGGTGCC TTTACCAAGC TTAGTTCTCT GGGCACCGGA GGTGGCAGTG TGACTTCTTC
  ATGGAATTGG AGGAGGGAAG GAGATGAGTT TTAAGATTCA CAAGTGGTAA CTACCAGGGC
  W
  GTAGAACCTG AAGAAAGGAG GTCAGGGGCT TGACAGTAAA ATCATAAACA CCGCAGACCA
  CCTCTGGTCA TGGCTTACCC ACACACCCAA AGCTCTGATT TCCTTGGTCC AGAAACGGGG
  AAAGTAAGCA GGGAAAGTGG GCTTCTTGCC CATCCTACTT GTTCCCAGGA GCGTTTATAT
  GACTCTGAGA AGACCCTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390696813	MGP_WTSI_14_31946119	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216201200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390696813	MGP_WTSI_14_31946119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30854890 () rs orientation: forward

Symbol	Name	Function Class
B930019K04Rik	RIKEN cDNA B930019K04 gene	1180 bp upstream
Cpgi6282	CpG island 6282	1123 bp distal
Nt5dc2	5'-nucleotidase domain containing 2	within coordinates
Rr489959	regulatory region 489959	1870 bp distal
Rr489961	regulatory region 489961	982 bp proximal
Rr489962	regulatory region 489962	1483 bp proximal
Tssr124915	transcription start site region 124915	1871 bp downstream
Tssr124916	transcription start site region 124916	1822 bp downstream
Tssr124917	transcription start site region 124917	1813 bp downstream
Tssr124918	transcription start site region 124918	1797 bp upstream