rs216211121 SNP Detail

Summary

• ID
  rs216211121
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67854746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTATGAG TTCTAATTTT GCATTCAACT TCTCAACTTT
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTGC TTTGGCCATC CTAGAACTCA
  T
  TACTCAGTAT GTAGATTAGG TTGGCCTAGC ATATGATTAA TTTCATGTGA ACTCTAAACT
  CTGACCTCAA AGTCTAGTCC CCGCCCCCGC CTCCTCCCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323722451	CHEV_11_67777422	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216211121					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67854746 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	1514 bp proximal
Rr449567	regulatory region 449567	815 bp distal
Rr449568	regulatory region 449568	375 bp proximal
Rr449569	regulatory region 449569	1712 bp proximal
Tssr108559	transcription start site region 108559	1686 bp downstream
Tssr108560	transcription start site region 108560	1711 bp downstream