rs216215199 SNP Detail

Summary

• ID
  rs216215199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60960887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAATTA CTTTCTGTGC
  TTTATCTGCA CATGTATCGG TATATCTCAT ACATGCCTAG TGCCAGAGGA AGTCAGAAAA
  GAACATGGAA TGCCCTGTAA TTGGAGTTAG AGATGGTTAT AAATTACTAT GTAAGCACTG
  GAAACTGAAT CATAGTCCCC TGCAAGAACA AAAGGTGCTC TTAATTAAGC CATCTCTCCA
  R
  TCCCTATACT TTTGTATATA CATTTTATGC ATATATATGT ATGTATGTAT GTGTGTGTGT
  GTGTGTATAT ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACGACAAAAA
  TCTTCAGAGG AAAATGTATA GAAAGGGGCT TATGTGTGCA TTGGGCTAGC TAAACTTGAG
  TCTGTGAGAA AGCCAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327722	CHEV_10_60587856	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216215199					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60960887 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	29 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates