rs216224916 SNP Detail

Summary

• ID
  rs216224916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13841740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCGGGTCC TGCGGCTCAA GCCCCAGCCT AGCGGCCCTG
  GCCCCCGCCC TGGCTCCATC TCCTAACAGT GTCCGAAAAT AAATAAATAT ATAAATAAAG
  R
  CAAGAGGAGC CTGGGCTGGC GGTGGGGATC GCCTCCCTCC CTCCTCCCTC CCTCCACGCC
  CGCCCTCCCT CTGTCCTTAA GGAAATGCTA CCAGACACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498370	MGP_WTSI_10_13685802	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216224916					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498370	MGP_WTSI_10_13685802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13841740 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	21 bp downstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	254 bp upstream
Gm66890	predicted gene, 66890	339 bp downstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	79 bp upstream
Rr384171	regulatory region 384171	539 bp downstream
Rr427854	regulatory region 427854	1366 bp distal
Rr427855	regulatory region 427855	265 bp distal
Rr427856	regulatory region 427856	within coordinates
Rr427857	regulatory region 427857	271 bp proximal
Rr427858	regulatory region 427858	394 bp proximal
Tssr3141	transcription start site region 3141	115 bp upstream
Tssr92402	transcription start site region 92402	1349 bp downstream
Tssr92403	transcription start site region 92403	1182 bp downstream
Tssr92404	transcription start site region 92404	1149 bp downstream
Tssr92405	transcription start site region 92405	1121 bp downstream
Tssr92406	transcription start site region 92406	953 bp downstream
Tssr92407	transcription start site region 92407	748 bp downstream
Tssr92408	transcription start site region 92408	717 bp downstream
Tssr92409	transcription start site region 92409	684 bp downstream
Tssr92410	transcription start site region 92410	657 bp downstream
Tssr92411	transcription start site region 92411	157 bp downstream
Tssr92412	transcription start site region 92412	125 bp downstream
Tssr92413	transcription start site region 92413	104 bp downstream
Tssr92414	transcription start site region 92414	97 bp upstream
Tssr92415	transcription start site region 92415	178 bp upstream
Tssr92416	transcription start site region 92416	210 bp upstream
Tssr92417	transcription start site region 92417	243 bp upstream
Tssr92418	transcription start site region 92418	272 bp upstream
Tssr92419	transcription start site region 92419	981 bp upstream
Tssr92420	transcription start site region 92420	1013 bp upstream
Tssr92421	transcription start site region 92421	1138 bp upstream
Tssr92422	transcription start site region 92422	1825 bp upstream
Tssr96784	transcription start site region 96784	346 bp upstream
Tssr96785	transcription start site region 96785	321 bp upstream
Tssr96786	transcription start site region 96786	754 bp downstream
Tssr96787	transcription start site region 96787	784 bp downstream
Tssr96788	transcription start site region 96788	825 bp downstream
Tssr96789	transcription start site region 96789	1480 bp downstream
Tssr96790	transcription start site region 96790	1637 bp downstream