rs216243136 SNP Detail

Summary

• ID
  rs216243136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107663170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG TCTGGGTCTC TAGCCCTTGC
  Y
  TCTCCCTGGA GCAGAGACCA CGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320865927	CHEV_3_107558772	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216243136					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107663170 () rs orientation: forward

Symbol	Name	Function Class
Csf1	colony stimulating factor 1 (macrophage)	Intron
Gm40121	predicted gene, 40121	within coordinates
Rr583039	regulatory region 583039	926 bp distal
Rr583040	regulatory region 583040	1008 bp distal
Rr583041	regulatory region 583041	1727 bp proximal