rs216245340 SNP Detail

Summary

• ID
  rs216245340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8974075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGAAAT AAAAATAAAC
  AAAAACTAAA ATTAGGAAAA AAGTCCTTGC TATAGTTTTT CAATCTGCAT TTTGAGTTCC
  CTCAAACAAA GGCCACAGCA TCAAAAACTC CGACTAACAA AGAGTATAGA GAAATGCTGC
  CAATATATCT GAATGACTGA AGAGGTGTTT TTTTTCATCT TAAAAGGTTT GAAGCCCTTT
  R
  TAAGTGCTGG GAATTGCACC CAGGACAGCA ACTAGTGTTC CTAGCTACTC CAGCGTGCCC
  TCCCCCCCCC CCCAGGTTTT TGTTTTGTTT TTAACAGAGG GATTGAGAGA GTTCTAAATC
  TGTAGCACAA CTGAAGCTCT TGGTGTGAAA AGCACACACA CACACACACA CACACACACA
  CACACACACA CCCGCCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886819	CHEV_12_8930881	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216245340					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8974075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	1495 bp distal
Laptm4a	lysosomal-associated protein transmembrane 4A	within coordinates
Rr403227	regulatory region 403227	1969 bp downstream
Rr462718	regulatory region 462718	1726 bp distal
Rr462719	regulatory region 462719	1451 bp distal
Rr462720	regulatory region 462720	575 bp distal
Tssr112756	transcription start site region 112756	1958 bp downstream