rs216254396 SNP Detail

Summary

• ID
  rs216254396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11020045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCCTCT TTTGGCTTCT
  GCAAGCACTG GACACATGTG GCCCACATTC TTACACTCAC ACTCTGAGTT TTAAAAATTA
  AAGGGGGTGG GCGGCTGGAG AGATGGCTCA GCGGTTAAGA GCACTGACTG CCCTTCCAGA
  GATCCTGTGT TCAATTCCTA GCAACCACAT GGTGGCTCAC AACCATCTGT AATGAGGTCT
  R
  ATGCCCTCTT CTGGTGTGTT TGAAGACAGC AACAGTATAC TCACATACAT AAAATAAATA
  AATGTTAAAA AAAAAAAACA GCCAAAAAAC AAAAAAATCC AACCAAACAA CTCTCAAGAG
  ATAAATAATT ACTTACACTT TGACCCGAAG TTCTTTCTCT GGAATTTTCC ATAATATCAC
  CATTAAAAAT AAATTTTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395395766	MGP_WTSI_16_11202274	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216254396					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395395766	MGP_WTSI_16_11202274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11020045 () rs orientation: forward

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	1202 bp upstream
Cpgi7962	CpG island 7962	624 bp proximal
Gm60496	predicted gene, 60496	1162 bp downstream
Rr404684	regulatory region 404684	1037 bp upstream
Rr511715	regulatory region 511715	within coordinates
Rr511716	regulatory region 511716	362 bp proximal
Rr511717	regulatory region 511717	1140 bp proximal
Rr511718	regulatory region 511718	1220 bp proximal
Rsl1d1	ribosomal L1 domain containing 1	within coordinates
Tssr137080	transcription start site region 137080	1194 bp upstream
Tssr140007	transcription start site region 140007	1797 bp upstream
Tssr140008	transcription start site region 140008	1078 bp downstream