rs216255888 SNP Detail

Summary

• ID
  rs216255888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83878694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATGTGT ATCAGCTTCA
  TTAACAGCAG TGCCAGGGGC GCAAAATTTT ACTGTAGTGG GAGTGACGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTATGTGTGT GTGTGTGTTG
  GAGGGTGCTT AGATTGGTCA GCACAGAGGG AGGCGACTTG AGACTGCGGC CAGTCTTTAC
  R
  TGGCCAAGTC TGGGGACTTC TCCAGCCGAG ACAGCCGGGC TGAGGCTCGA GCTTCCCTCT
  TTGAAGAGAT AAACCTGAAA AGGCTTCCCT TGAATGGCTA GGCCCTTCCG ATCGCATTGT
  CCGAGGAAGG GGGCTTGAGG TGGGAGCCAT CCCCTTGGCT GCGGCTTGCC TTAGGGGCCT
  GGTGTTTTCT TCTAAGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389280606	MGP_WTSI_13_83870180	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216255888					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389280606	MGP_WTSI_13_83870180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83878694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5906	CpG island 5906	595 bp distal
Cpgi5907	CpG island 5907	within coordinates
Gm55122	predicted gene, 55122	within coordinates
Mir9-2hg	Mir9-2 host gene	within coordinates
Rr483282	regulatory region 483282	1085 bp distal
Rr483283	regulatory region 483283	981 bp distal
Rr483284	regulatory region 483284	329 bp distal
Rr483285	regulatory region 483285	514 bp proximal
Rr483286	regulatory region 483286	565 bp proximal
Rr483287	regulatory region 483287	1146 bp proximal
Rr483288	regulatory region 483288	1890 bp proximal
Tssr120527	transcription start site region 120527	1107 bp downstream
Tssr120528	transcription start site region 120528	1081 bp downstream
Tssr120529	transcription start site region 120529	803 bp upstream
Tssr120530	transcription start site region 120530	1792 bp upstream
Tssr120531	transcription start site region 120531	1863 bp upstream
Tssr120532	transcription start site region 120532	1988 bp upstream
Tssr123338	transcription start site region 123338	1440 bp upstream
Tssr123339	transcription start site region 123339	991 bp upstream
Tssr123340	transcription start site region 123340	895 bp upstream
Tssr123341	transcription start site region 123341	864 bp upstream