rs216262173 SNP Detail

Summary

• ID
  rs216262173
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66471224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGTGAA GCATAATGTT
  AATATCTGTG TTTTCCAATG GTCTTAGGCA ACTCCTGTGT AAGAGCTGTT CAACCCTCAA
  GGGGTCTCTA CCCACAGGTT GAGAACACCC TCACAATTAC TTCATTTCTC TCTTCTCTGA
  ACTCCCTCTC TGAAAGCGCC AGATAGATGC CTCCAATATA CAGTATTGGT CATGGTCATG
  M
  TTCCAGATCC TTCCTTTGAG CATCTCCATA AACATTTTGG TGACAAGTTA TCTTGTCAAG
  GAAACCCATC ATCTACCCAT TTCACTTCTG GAGCATTTTT AGCGTTGATA GCATTTTCCT
  AGGACATGTT GAAGTGTTTC TACATCTGCT TTCAGATCCT AGCTCTCCCT CTGGAAGTGC
  CAGCCACGAG CGTCACTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391373050	MGP_WTSI_14_66852612	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216262173					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391373050	MGP_WTSI_14_66852612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66471224 () rs orientation: forward

Symbol	Name	Function Class
Gm52099	predicted gene, 52099	within coordinates
Gm63521	predicted gene, 63521	1358 bp upstream
Ptk2b	PTK2 protein tyrosine kinase 2 beta	within coordinates
Rr299984	regulatory region 299984	within coordinates
Tssr129296	transcription start site region 129296	1506 bp upstream
Tssr129297	transcription start site region 129297	1453 bp upstream
Tssr129298	transcription start site region 129298	1415 bp upstream
Tssr129299	transcription start site region 129299	1356 bp upstream
Tssr129300	transcription start site region 129300	1768 bp downstream
Tssr129301	transcription start site region 129301	1788 bp downstream
Tssr129302	transcription start site region 129302	1812 bp downstream
Tssr129303	transcription start site region 129303	1892 bp downstream