About   Help   FAQ
rs216263178 SNP Detail
Summary
  • ID
    rs216263178
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19429024 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTTGAGTTCT GAAGCCTTGG
CCCGACCCAA GACACAGCTC AAGCCCTAGC CTGCCCCTGT TAGTGGGAGC CCTGCTGAGT
CCCTGAGAAC TGAGGGGGTG GGAGGAGAAG CCAGCCAGGG GCTCTCCAGC TTCCACCATG
ACCCCTTTGA GTACCAGGAC ATGGGGAGAA TGGTTTTGTG TCCCCAGCCT GAACTCACTC
Y
CCATACACTT GCTGGGAAAG TCAAAAGGCA TGCAGCACAG GCAGGGGAGA AAGAATGGGG
CTAAGGCCCC ATGACCCAGA GGGAGCAAAG ATCCAGCTAA CTTCAGAGCA AGGGAGAAAG
GCTGAGGTTC CAAAAGCCAC GTAGAAACCG TAGAAACCGC CAACCAAAGG CCCAGAGCAA
AAGAAACCGC GGGAGGGTGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754772 MGP_WTSI_7_20280448 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216263178 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754772 MGP_WTSI_7_20280448 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429024 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 1010 bp downstream
Cpgi18507 CpG island 18507 1422 bp proximal
Rr643238 regulatory region 643238 1949 bp distal
Rr643239 regulatory region 643239 within coordinates
Rr643240 regulatory region 643240 1352 bp proximal
Rr643241 regulatory region 643241 1537 bp proximal
Tssr2112 transcription start site region 2112 1352 bp upstream
Tssr2113 transcription start site region 2113 1377 bp upstream
Tssr2114 transcription start site region 2114 1492 bp upstream
Tssr2115 transcription start site region 2115 1528 bp upstream
Tssr2116 transcription start site region 2116 1603 bp upstream
Tssr2117 transcription start site region 2117 1625 bp upstream
Tssr2118 transcription start site region 2118 1732 bp upstream
Tssr2119 transcription start site region 2119 1741 bp downstream
Tssr2120 transcription start site region 2120 1804 bp upstream
Tssr2121 transcription start site region 2121 1836 bp upstream
Tssr64880 transcription start site region 64880 1169 bp upstream
Tssr64881 transcription start site region 64881 1221 bp upstream
Tssr64882 transcription start site region 64882 1265 bp upstream
Tssr64883 transcription start site region 64883 1303 bp upstream
Tssr64884 transcription start site region 64884 1330 bp upstream
Tssr64885 transcription start site region 64885 1409 bp upstream
Tssr64886 transcription start site region 64886 1430 bp upstream
Tssr64887 transcription start site region 64887 1462 bp upstream
Tssr64888 transcription start site region 64888 1681 bp upstream
Tssr64889 transcription start site region 64889 1775 bp upstream
Tssr64890 transcription start site region 64890 1821 bp upstream
Tssr64891 transcription start site region 64891 1844 bp upstream
Tssr64892 transcription start site region 64892 1877 bp upstream
Tssr64893 transcription start site region 64893 1912 bp upstream
Tssr70973 transcription start site region 70973 1193 bp downstream
Tssr70974 transcription start site region 70974 1239 bp downstream
Tssr70975 transcription start site region 70975 1267 bp downstream
Tssr70976 transcription start site region 70976 1302 bp downstream
Tssr70977 transcription start site region 70977 1350 bp downstream
Tssr70978 transcription start site region 70978 1365 bp downstream
Tssr70979 transcription start site region 70979 1389 bp downstream
Tssr70980 transcription start site region 70980 1399 bp downstream
Tssr70981 transcription start site region 70981 1420 bp downstream
Tssr70982 transcription start site region 70982 1434 bp downstream
Tssr70983 transcription start site region 70983 1467 bp downstream
Tssr70984 transcription start site region 70984 1484 bp downstream
Tssr70985 transcription start site region 70985 1549 bp downstream
Tssr70986 transcription start site region 70986 1582 bp downstream
Tssr70987 transcription start site region 70987 1612 bp downstream
Tssr70988 transcription start site region 70988 1656 bp downstream
Tssr70989 transcription start site region 70989 1695 bp downstream
Tssr70990 transcription start site region 70990 1707 bp downstream
Tssr70991 transcription start site region 70991 1752 bp downstream
Tssr70992 transcription start site region 70992 1760 bp downstream
Tssr70993 transcription start site region 70993 1769 bp downstream
Tssr70994 transcription start site region 70994 1810 bp downstream
Tssr70995 transcription start site region 70995 1815 bp downstream
Tssr70996 transcription start site region 70996 1848 bp downstream
Tssr70997 transcription start site region 70997 1882 bp downstream
Tssr70998 transcription start site region 70998 1944 bp downstream
Tssr70999 transcription start site region 70999 1962 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory