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rs216268128 SNP Detail
Summary
  • ID
    rs216268128
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94842439 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCCTCACT TCATTCCTAC
CTTGGTAATG ACCCTCTCCC GCTGTCTTCA TTCACACCAG AGTCACACCG GAACTTGGGG
CAAGACAGTC ATCGAATACA AAACCACCAA GACCTCCCGC CTGCCCATCA TCGATGTGGC
TCCCTTGGAC ATTGGTGCCC CAGACCAGGA ATTCGGACTA GACATTGGCC CTGCCTGCTT
Y
GTGTAAACTC CCTCCACCCC AATCTGGTTC CCTCCCACCC AGCCCACTTT TCCCCAACCC
TGGAAACAGA CGAACAACCC AAACTCAATT TCCCCCAAAA GCCAAAAATA TGGGAGATAA
TTTCACATGG ACTTTGGAAA ACATTTTTTT TCCTTTGCAT TCACCTTTCA AACTTAGTTT
TTACCTTTGA CCAACTGAAC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336272 MGP_WTSI_11_94812927 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216268128 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336272 MGP_WTSI_11_94812927 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842439 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 1705 bp proximal
Tssr3647 transcription start site region 3647 368 bp upstream
Tssr104262 transcription start site region 104262 1439 bp downstream
Tssr104263 transcription start site region 104263 1306 bp downstream
Tssr104264 transcription start site region 104264 1284 bp downstream
Tssr104265 transcription start site region 104265 1258 bp downstream
Tssr104266 transcription start site region 104266 1246 bp downstream
Tssr104267 transcription start site region 104267 1179 bp downstream
Tssr104268 transcription start site region 104268 1151 bp downstream
Tssr104269 transcription start site region 104269 1138 bp downstream
Tssr104270 transcription start site region 104270 1117 bp downstream
Tssr104271 transcription start site region 104271 1063 bp downstream
Tssr104272 transcription start site region 104272 869 bp downstream
Tssr104273 transcription start site region 104273 775 bp downstream
Tssr104274 transcription start site region 104274 757 bp downstream
Tssr104275 transcription start site region 104275 748 bp downstream
Tssr104276 transcription start site region 104276 737 bp downstream
Tssr104277 transcription start site region 104277 463 bp downstream
Tssr104278 transcription start site region 104278 442 bp downstream
Tssr104279 transcription start site region 104279 385 bp downstream
Tssr104280 transcription start site region 104280 373 bp downstream
Tssr104281 transcription start site region 104281 359 bp downstream
Tssr104282 transcription start site region 104282 289 bp downstream
Tssr104283 transcription start site region 104283 136 bp downstream
Tssr104284 transcription start site region 104284 76 bp downstream
Tssr104285 transcription start site region 104285 46 bp downstream
Tssr104286 transcription start site region 104286 13 bp downstream
Tssr104287 transcription start site region 104287 within coordinates
Tssr104288 transcription start site region 104288 13 bp upstream
Tssr104289 transcription start site region 104289 54 bp upstream
Tssr104290 transcription start site region 104290 100 bp upstream
Tssr104291 transcription start site region 104291 109 bp upstream
Tssr104292 transcription start site region 104292 147 bp upstream
Tssr104293 transcription start site region 104293 295 bp upstream
Tssr104294 transcription start site region 104294 332 bp upstream
Tssr104295 transcription start site region 104295 390 bp upstream
Tssr104296 transcription start site region 104296 409 bp upstream
Tssr104297 transcription start site region 104297 442 bp upstream
Tssr104298 transcription start site region 104298 480 bp upstream
Tssr104299 transcription start site region 104299 508 bp upstream
Tssr104300 transcription start site region 104300 528 bp upstream
Tssr104301 transcription start site region 104301 652 bp upstream
Tssr104302 transcription start site region 104302 664 bp upstream
Tssr104303 transcription start site region 104303 678 bp upstream
Tssr104304 transcription start site region 104304 717 bp upstream
Tssr104305 transcription start site region 104305 742 bp upstream
Tssr104306 transcription start site region 104306 757 bp upstream
Tssr104307 transcription start site region 104307 773 bp upstream
Tssr104308 transcription start site region 104308 843 bp upstream
Tssr104309 transcription start site region 104309 863 bp upstream
Tssr104310 transcription start site region 104310 908 bp upstream
Tssr104311 transcription start site region 104311 1004 bp upstream
Tssr104312 transcription start site region 104312 1074 bp upstream
Tssr104313 transcription start site region 104313 1090 bp upstream
Tssr104314 transcription start site region 104314 1506 bp upstream
Tssr110222 transcription start site region 110222 715 bp upstream
Tssr110223 transcription start site region 110223 356 bp upstream
Tssr110224 transcription start site region 110224 292 bp upstream
Tssr110225 transcription start site region 110225 76 bp upstream
Tssr110226 transcription start site region 110226 36 bp upstream
Tssr110227 transcription start site region 110227 23 bp upstream
Tssr110228 transcription start site region 110228 within coordinates
Tssr110229 transcription start site region 110229 40 bp downstream
Tssr110230 transcription start site region 110230 71 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory