rs216292433 SNP Detail

Summary

• ID
  rs216292433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89731548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttaaaaaa aaatagcaaa tgcttttgag
  ggaaaatggg gtggggttgg tggaccctta tacagtactg gtgccactgt taattggtac
  agtcactgtg gaaatcagta caaaggatcc tttaaaaaAA CGTAAagccg ggcgtggtgg
  Y
  gcacgccttt aatcccagct ctcgggaggc agaggcaggt ggatttctga gttcgaggcc
  aacctggtct acaaagtgag ttccaggaca gccagggcta cacagagaaa ccctgtctcg
  aaaaagaaaa aACAaaacaa acaaacaaac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322769747	CHEV_8_91528819	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216292433					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89731548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	1514 bp proximal
Gm56831	predicted gene, 56831	862 bp downstream
Rr1386	regulatory region 1386	223 bp distal
Rr190948	regulatory region 190948	1948 bp distal
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	899 bp proximal
Tssr78676	transcription start site region 78676	1057 bp downstream
Tssr82368	transcription start site region 82368	1692 bp downstream
Tssr82369	transcription start site region 82369	1720 bp downstream
Tssr82370	transcription start site region 82370	1739 bp downstream
Tssr82371	transcription start site region 82371	1751 bp downstream
Tssr82372	transcription start site region 82372	1777 bp downstream