rs216301909 SNP Detail

Summary

• ID
  rs216301909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16190161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGTGTC AGACAGAAGG
  GAATGTATCT AGTGAGACAC TAGAGGGTTT ATATGTAGGG AAGAAGCTGG GAAAGGAGGA
  CTGTTTTAAC AGAGGACACC TTAAAGATAC TTCTGCACAA TAAAAGACAG AGAATGAAAA
  GGTGGTGGGA AGAATTTAAA AAAAAAAAAA GAAAGAAAAA GAAAGAAAAG CCTCAGAAAG
  R
  AATTGTTTTA AAGTGCACAC TGGTCTTGTT CTGTGAATAC TGTAATCCTC AATGAACTCA
  GCTCTGCTGG TACTTTGAGG AGAAATGACC CAGCCAGGCA GCCCTGCCGT GGATGCTACA
  CTATGGTCAA GGCTGACAAG GGGAGGTGGG CAAGTAGAAG AACAAAATGA GAGTAGTTCA
  TGCCAGGGGA AAAGAATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387820246	MGP_WTSI_13_16107409	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216301909					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387820246	MGP_WTSI_13_16107409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16190161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1748 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118431	transcription start site region 118431	1168 bp downstream
Tssr118432	transcription start site region 118432	1137 bp downstream
Tssr118433	transcription start site region 118433	1124 bp downstream
Tssr118434	transcription start site region 118434	1103 bp downstream
Tssr118435	transcription start site region 118435	752 bp upstream
Tssr118436	transcription start site region 118436	1108 bp upstream
Tssr118437	transcription start site region 118437	1348 bp upstream
Tssr118438	transcription start site region 118438	1471 bp upstream
Tssr118439	transcription start site region 118439	1488 bp upstream
Tssr118440	transcription start site region 118440	1707 bp upstream
Tssr118441	transcription start site region 118441	1797 bp upstream