rs216309490 SNP Detail

Summary

• ID
  rs216309490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122640206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCGCC CCGCCGCGAG
  TGTGGGTCGC TTCAGCAGCT GCCAGCCGGC CGCGGGCAGC GCAGGCCCCG GGCGCTGCGC
  CGAGGAGACG GGGCGCAGAT GAGGAGCGGC GCCGGGCCGA GCCCTCGGCG CCGGGAACCG
  CGAGGCAGGC GACGGGAGAG GAGCTGCGCG GCGCGCCGGC CCGAGCCCCT CAGCTCTGCA
  M
  CCCCGACAGC GGCGGCGGAG GGAACTGCGG CGGAGGAGAC GGGAGGTGGC GGCGTCGGGG
  ACGGCTCCGC GGAGGCTGCT CTAATAGCAT TTATCCGCCG CTGCCTCCCC TCTCGCCGCC
  GCCGCGGCAT GTGGACGCCG CTCATTGGCC GAGAGAGCCC CCAGCGCGGC GCGGGCGGCG
  CGGCCCCGCC CCCTCCTCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519167	MGP_WTSI_5_122952152	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216309490					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519167	MGP_WTSI_5_122952152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122640206 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	within coordinates
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	1295 bp downstream
Gm57291	predicted gene, 57291	302 bp upstream
Rr378565	regulatory region 378565	1609 bp upstream
Rr399329	regulatory region 399329	1310 bp upstream
Tssr1626	transcription start site region 1626	1212 bp downstream
Tssr48697	transcription start site region 48697	1408 bp downstream
Tssr48698	transcription start site region 48698	530 bp downstream
Tssr48699	transcription start site region 48699	408 bp downstream
Tssr48700	transcription start site region 48700	333 bp downstream
Tssr48701	transcription start site region 48701	323 bp upstream
Tssr53124	transcription start site region 53124	1802 bp upstream
Tssr53125	transcription start site region 53125	1768 bp upstream
Tssr53126	transcription start site region 53126	1310 bp upstream
Tssr53127	transcription start site region 53127	920 bp upstream
Tssr53128	transcription start site region 53128	878 bp upstream
Tssr53129	transcription start site region 53129	862 bp upstream
Tssr53130	transcription start site region 53130	355 bp upstream
Tssr53131	transcription start site region 53131	within coordinates
Tssr53132	transcription start site region 53132	19 bp downstream
Tssr53133	transcription start site region 53133	49 bp downstream
Tssr53134	transcription start site region 53134	124 bp downstream
Tssr53135	transcription start site region 53135	140 bp downstream
Tssr53136	transcription start site region 53136	484 bp downstream
Tssr53137	transcription start site region 53137	588 bp downstream