rs216310431 SNP Detail

Summary

• ID
  rs216310431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65201519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTTTTT AACATCCGAA
  TAAAGAGACT TCCCGAGAAA TTAGGCGACC GCAAAATTTT GGGTTCGCCG CTTGCCGTAG
  CGCGCTCATT GGTGCCCAGG TTACCGCCCC ATTCTCTGGA ATCACGTTAG TCTCCACGCA
  TGCGCAGCGT AAACTCACGC CTCCTCCTGG GTCTAGGACG CAAGCGCGCG CACGCTCCCC
  R
  GCCGGGGTGG GCGGGGAATG GGGGAGAGTA GGGAGGGAGG GGAGGAGGGG AGGAGCCTAC
  TCCGGTGAGT AGAAGGCGGT GGGACGCTGG GATCGTCCAG GCCTGGCTGC CTGGTGGGGA
  AAACGCTGCG CCAGCATAGA ACCGACGGAA GGGAGCGGAG CCAGTCAGCG GAACACTCGC
  GCGACACGAT CGGGTCGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377861949	MGP_WTSI_9_65142044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216310431					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377861949	MGP_WTSI_9_65142044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65201519 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	23 bp upstream
Cpgi21943	CpG island 21943	within coordinates
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	within coordinates
Tssr85679	transcription start site region 85679	68 bp downstream
Tssr85680	transcription start site region 85680	33 bp downstream
Tssr85681	transcription start site region 85681	38 bp upstream
Tssr85682	transcription start site region 85682	133 bp upstream
Tssr85683	transcription start site region 85683	158 bp upstream
Tssr85684	transcription start site region 85684	190 bp upstream
Tssr85685	transcription start site region 85685	203 bp upstream
Tssr85686	transcription start site region 85686	320 bp upstream