rs216318382 SNP Detail

Summary

• ID
  rs216318382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCTGAA AGTCAATTAA
  CTCCATGCAT GAGAAATTCT TATTAATGTT TTTGGCCTAG GAATAAAGTA AATATACTAC
  AAAGAGGCTA ATCAGCAAGA TTCTTCATCT GGTAGGTGGT CAGTTCAGTG CCACATGGTT
  AGCATGTCCT TTCACTGACA TGTTCACTTA GAAAATAAAA GGAACATAAT TTCTACTGGA
  R
  AGAAGCTTAT GTTCATTATT AAACACAGAT AACTCCACTA GTAACTGCAG TCATGATGGA
  AAAAATGTAT TGGTGCCCAC ATGAGCTTTC TAGACATAAC TTATTGATGA GTAGTTTACC
  TCTGCCTGCA GCTGTCCCAT GAGATTCACC TTCTGAAGTT TCTGCTAGAA ATAAACAATA
  CATTAAAAAT CTCAAACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777311	MGP_WTSI_5_88124933	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216318382					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777311	MGP_WTSI_5_88124933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843767 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1930 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1890 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1733 bp distal
Tssr1529	transcription start site region 1529	1347 bp downstream
Tssr46883	transcription start site region 46883	1397 bp downstream
Tssr46884	transcription start site region 46884	1382 bp downstream
Tssr46885	transcription start site region 46885	1361 bp downstream
Tssr46886	transcription start site region 46886	1331 bp downstream
Tssr46887	transcription start site region 46887	1314 bp downstream
Tssr46888	transcription start site region 46888	1208 bp downstream
Tssr46889	transcription start site region 46889	1189 bp downstream
Tssr46890	transcription start site region 46890	1156 bp downstream
Tssr46891	transcription start site region 46891	1143 bp downstream
Tssr46892	transcription start site region 46892	1114 bp downstream
Tssr46893	transcription start site region 46893	1088 bp downstream
Tssr46894	transcription start site region 46894	1043 bp downstream
Tssr46895	transcription start site region 46895	1023 bp downstream
Tssr46896	transcription start site region 46896	944 bp downstream
Tssr51618	transcription start site region 51618	1368 bp upstream
Tssr51619	transcription start site region 51619	1334 bp upstream
Tssr51620	transcription start site region 51620	1324 bp upstream
Tssr51621	transcription start site region 51621	1305 bp upstream
Tssr51622	transcription start site region 51622	1269 bp upstream
Tssr51623	transcription start site region 51623	1253 bp upstream
Tssr51624	transcription start site region 51624	1236 bp upstream
Tssr51625	transcription start site region 51625	1226 bp upstream
Tssr51626	transcription start site region 51626	1214 bp upstream
Tssr51627	transcription start site region 51627	1188 bp upstream
Tssr51628	transcription start site region 51628	1078 bp upstream
Tssr51629	transcription start site region 51629	984 bp upstream
Tssr51630	transcription start site region 51630	936 bp upstream
Tssr51631	transcription start site region 51631	897 bp upstream
Tssr51632	transcription start site region 51632	638 bp upstream
Tssr51633	transcription start site region 51633	145 bp downstream
Tssr51634	transcription start site region 51634	267 bp downstream
Tssr51635	transcription start site region 51635	1231 bp downstream
Tssr51636	transcription start site region 51636	1257 bp downstream
Tssr51637	transcription start site region 51637	1370 bp downstream