rs216338451 SNP Detail

Summary

• ID
  rs216338451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18913800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCTCTC GGACCTTGCT
  GAAGAACAGG GCTATACCGT TGCGGTATAG CCTTCATCAC TCTGGTCTTT CTGCAGCAGC
  CGTCGCTACT TATCACCTGA GCGCCTGGCC TCTGTGCGTC GCGAGGACCC CCGTAGCCGT
  ACCACATCTT CCAGTAGTAA TTGTAGCGCC AAAAAAGAAG GGTAAGTTCG CGGGTGGGGC
  Y
  CCAACCCTAG ACAGGCAAGG GAATGTATGG GGAATTAAAG CCAGACCCCT GGCCACGAGG
  TTATATCCTA GAGTGACTCT GGTGGAGTCA GAACACAACA GTCAAGAGTC TCTGTAGGGA
  ATGTAAGAAT CAGAGGTAGG ATTATGGTCA GAATTTGGGG GTGTAACTGG AATTAACTTG
  GTAGAACCAG AACCTAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743488	MGP_WTSI_7_19765224	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216338451					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743488	MGP_WTSI_7_19765224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18913800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	1581 bp distal
Cpgi18452	CpG island 18452	within coordinates
Cpgi18453	CpG island 18453	1201 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	1590 bp upstream
Rr155272	regulatory region 155272	1000 bp distal
Rr167138	regulatory region 167138	within coordinates
Rr167139	regulatory region 167139	1000 bp proximal
Tssr64795	transcription start site region 64795	1636 bp downstream
Tssr64796	transcription start site region 64796	838 bp downstream
Tssr64797	transcription start site region 64797	1287 bp upstream
Tssr64798	transcription start site region 64798	1336 bp upstream
Tssr64799	transcription start site region 64799	1418 bp upstream
Tssr64800	transcription start site region 64800	1532 bp upstream