rs216346854 SNP Detail

Summary

• ID
  rs216346854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTCATC CACCTCAGAG
  TACCTGCAAG GTCCGGGAGC ACCGTCAAAG GGCCACTGTG GAAGCCGGGA AGTGAGGAGG
  CCGACTTGGA GATACTTAGC ACTGAGGCTT CGAGGGAGGG GAAATGACAC CAGGGCAACG
  TAGGGGGATG GGGGGGTCTC ACTTCCTGTT AGGAGAAAGC AAACAGAGTT TCTTTTCTTG
  Y
  TGTTGCTTTC TTTTTTATGT GCAGCCCAGG CTGTCCCACG AGCTCAGTTT GTTAAGACTC
  CTTTTGAACT TCTGATTCTC TTACTTCCAC CCCCAGGGCT GGGATGATGG CTGCGCACCA
  CTAGAACAGT CTGCAGTGTG GTTAGACCCC TGGCTTCTGT GCCTGCTACA TCCTCACCCC
  CAACCCCCCT CCACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305840	CHEV_4_128295961	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216346854					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512510 () rs orientation: forward

Symbol	Name	Function Class
Tlr12	toll-like receptor 12	98 bp upstream
Tssr43437	transcription start site region 43437	390 bp upstream
Tssr43438	transcription start site region 43438	120 bp upstream
Tssr43439	transcription start site region 43439	92 bp upstream
Tssr43440	transcription start site region 43440	71 bp upstream