rs216351585 SNP Detail

Summary

• ID
  rs216351585
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129227347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGATTT GAACTCAGGA
  CCTTTGGAAG ATCAGCCAGT GCTCTTAACC GCTGAGCCAC CTCTCCAGCC CAGCAGCCTC
  ATTCTTAAGT TACTAGTAAA ATGCACATGA ACTTTCCATG ACAGTAGAGA TGTATTGCAG
  ATGGTACTGC CTTCCTTACC ATGCACAAGG TTCAATTCCT AGCCCTCAAA CCAAAACAAC
  K
  CTTTACTCCA AATTTCTATT ACCTGCTGAA CCCCATCAGC CTCATAATTG AATTCTGCAC
  GTATCTTAAC TCTTGAGTTT CCAAAGAATT CAGTACATTT TTGCCAAATT TACATTAGTA
  ATTACCCACA TCCACCATCT TTGGATTGCC ACTTGTTTCA GCAGGCCAGT CTGGTAGTTC
  ATGCTGACAG ACTTTCCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312023	CHEV_4_129010798	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216351585					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129227347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	1052 bp proximal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	1805 bp upstream
Rr600200	regulatory region 600200	1767 bp proximal
Rr600201	regulatory region 600201	1806 bp proximal
Tssr43492	transcription start site region 43492	1689 bp downstream
Tssr43493	transcription start site region 43493	1743 bp downstream
Tssr43494	transcription start site region 43494	1770 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	1978 bp upstream