rs216354106 SNP Detail

Summary

• ID
  rs216354106
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65020876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCGGGG ACGAGCGGGG
  CAGGGGCGGG GGAGGCCGGA AAGGCCCGGC CCACGGGGAG GGGATTCAAG TGGGACAAAA
  GTCCGGGAAG CGTCCGCCCC GCCCGGGCTT CTCCGCGGGG CACACCCGGC CGCCTGCTCG
  GCCTCCGCCG CCCTCCGCCG GCTCGCCGCT CCGCAGTACC CGGGCCTCCG GCTGTCCCCT
  M
  CACCCTCGGG CGTCTCCTCC AAAGCCTGCT CCCGCACGTA ACTTCCCCGG AACGCGCGGC
  CGCCGAGAGA CGTGCCGTCG GCGGGCAGAG CCGTCGCGGG CAACTCAGGC GGCCACGCAA
  AACCTGCCGG ACCGGGCCAC TGAGCATGCC CAGCCGGCGG GGGCGGGGCC TCCGCGAGGG
  GCGGGGCCAG GCCGGGTCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss371680326	MGP_WTSI_7_72516014	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	C	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs216354106					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	C	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371680326	MGP_WTSI_7_72516014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65020876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19209	CpG island 19209			within coordinates
Gm57226	predicted gene, 57226			175 bp upstream
Rr647944	regulatory region 647944			1654 bp distal
Rr647945	regulatory region 647945			124 bp distal
Rr647946	regulatory region 647946			within coordinates
Rr647947	regulatory region 647947			186 bp proximal
Tjp1	tight junction protein 1			Intron
				mRNA-UTR
Tssr67032	transcription start site region 67032			294 bp upstream
Tssr72804	transcription start site region 72804			244 bp upstream
Tssr72805	transcription start site region 72805			228 bp upstream
Tssr72806	transcription start site region 72806			180 bp upstream
Tssr72807	transcription start site region 72807			82 bp downstream