rs216358352 SNP Detail

Summary

• ID
  rs216358352
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103573892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGTGGTT AGAAGCCGCC
  CAGAAGAATG TGTCTGTGTA AGGGCTCCGA GAAGGGGGTA GGGACGGGGA CAGGCTCTAG
  TAAAGTTTGC TTCTCTCTGC TGCAGGCCAG CCTTTCTTTT CTCCACTTTG CTCGATAACG
  TGAGCGCCGA GAGCTGCAAA GTTAAAAGTT AAGCCAAAGT CAAGGAACTT TGGAAATTTA
  G
  TTTCCTTCTG TTGTGTATTG GAGAAGCGAG GATGGGGAGA CATGGGAGCG AGTCACAGAG
  TGCAGGTTTC TTTCCCTGTG TAAGATCGAC ACCTCCCCGT ATTTGCGACT AATCTTTTAG
  ACAACCTTCT GTCATTTTCG CTTAATTGCA TCTTTGAAAT AACAAACGCG GTGACTTCAT
  AGGTAGCTGC CTGGAGCTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321632964	CHEV_5_103855045	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216358352					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103573892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	within coordinates
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	within coordinates
Rr615857	regulatory region 615857	1800 bp distal
Rr615858	regulatory region 615858	515 bp distal
Rr615859	regulatory region 615859	within coordinates
Tssr47557	transcription start site region 47557	829 bp downstream
Tssr47558	transcription start site region 47558	795 bp downstream
Tssr47559	transcription start site region 47559	767 bp downstream
Tssr52160	transcription start site region 52160	297 bp upstream
Tssr52161	transcription start site region 52161	265 bp upstream